Drug target prediction through deep learning functional representation of gene signatures
Hao Chen , Frederick King , Bin Zhou , Yu Wang , Carter Canedy , Joel Hayashi , Yong Zhong , Max Chang , Lars Pache , Julian Wong , Yong Jia , John Joslin , Tao Jiang , Christopher Benner , Sumit K Chanda , and Yingyao Zhou
Spatial mapping of cellular senescence: emerging challenges and opportunities
Aditi U Gurkar , Akos A Gerencser , Ana L Mora , Andrew C Nelson , Anru R Zhang , Anthony B Lagnado , Archibald Enninful , Christopher Benz , David Furman , Delphine Beaulieu , Diana Jurk , Elizabeth L Thompson , Fei Wu , Fernanda Rodriguez , Grant Barthel , Hao Chen , Hemali Phatnani , Indra Heckenbach , Jeffrey H Chuang , Jeremy Horrell , Joana Petrescu , Jonathan K Alder , Jun Hee Lee , Laura J Niedernhofer , Manoj Kumar , Melanie Königshoff , Marta Bueno , Miiko Sokka , Morten Scheibye-Knudsen , Nicola Neretti , Oliver Eickelberg , Peter D Adams , Qianjiang Hu , Quan Zhu , Rebecca A Porritt , Runze Dong , Samuel Peters , Stella Victorelli , Thomas Pengo , Timur Khaliullin , Vidyani Suryadevara , Xiaonan Fu , Ziv Bar-Joseph , Zhicheng Ji , and João F Passos
DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning
Hao Chen , Dipan Shaw , Jianyang Zeng , Dongbo Bu , and Tao Jiang
Bioinformatics; Also in proceedings of the 27th Annual International Conference on Intelligent Systems for Molecular Biology and 17th European Conference on Computational Biology (ISMB/ECCB), 2019