Hao Chen

prof_pic_1.jpg

Gates & Hillman Centers (GHC) 7601,

Computational Biology Department,

Carnegie Mellon University,

Pittsburgh, PA 15213

hchen4 AT andrew DOT cmu DOT edu

I am a Postdoctoral Fellow in the Ray and Stephanie Lane Computational Biology Department of School of Computer Science at Carnegie Mellon University, working with Professors Ziv Bar-Joseph and Jose Lugo-Martinez. Prior to that, I completed my PhD in Computer Science at the University of California, Riverside, where I was supervised by Professor Tao Jiang.

My research interests lie broadly in computational biology and bioinformatics. Currently, my research focuses on the development of machine learning methods using large-scale single-cell and spatial omics data to study the programs of cellular organization, communication, and differentiation, and their impact on tissue development, health, and disease. I also worked on drug discovery and biological sequence modeling for learning isoform functions and alternative splicing.

During my PhD, I was a research intern with Novartis Institutes for BioMedical Research, where I worked on gene signature representation for drug discovery. I also interned at Google, working on deep learning topics.

I am currently on the job market and actively seeking a Tenure-track Assistant Professor position.

news

Mar 18, 2024 I gave a seminar talk with the title “Machine learning for studying tissue and disease at single-cell resolution” at the CMU Computational Biology Department.
Feb 29, 2024 Our FRoGS paper has been published in Nature Communications.
Jan 29, 2024 Our FRoGS paper was accepted in principle in Nature Communications.
Jan 18, 2024 I gave a talk at the CMU Computational Biology Department retreat.
Dec 08, 2023 I gave a talk at the UPMC Children’s Hospital of Pittsburgh.
Nov 10, 2023 I gave a talk and presented a poster at the the TriState SenNet Meeting in Rochester, NY.
Oct 23, 2023 I presented a poster at the the SenNet Consortium Meeting.
Jul 10, 2023 Our spatial transcriptomics cell segmentation paper is published in Nature Methods (CMU News).
Apr 15, 2023 The poster from our scResolve project received the poster award at the TriState SenNet Annual Meeting.
Mar 15, 2023 I presented a poster at the 8th Cold Spring Harbor Laboratory meeting on Network Biology.